Class Exercises and Reviews

Date Topic File Key
2015 Recitation Exercises
Sept 30, 2015 Hardy-Weinberg Equilibrium
Linkage Disequilibrium
W1_Rec.docx
W1_recitation.xlsx
R genetics user manual
SAS Genetics user manual
W1_recitation_s.xlsx
HWE-demo.R
LD_sasprogram.pdf
SAS_LD_output.pdf
Oct. 7, 2015 Inbreeding and Coancestry
InbreedingRules.pdf
Tabular.xls
InbreedingWorksheet.doc
InbreedingSupplement.xls
InbreedingWorksheet_s.doc
InbreedingSupplement_s.xls
Oct. 14, 2015 Genotypic values, Breeding Values GenotypicValues_2011.xls GenotypicValues_2011_s.xls
Nov. 4, 2015 Estimating Variances
One-way analysis
HW4_2011_HSExample.doc
HSExample.xls
HW4_2011_HSExample_s.doc
HSexample.sas
Nov. 16, 2015 BLUP for purelines   BLUPpurelines.xls
BarleyBLUPProgram.sas
Exercises from Previous Classes
  Worksheet on LD LD_ExtraProblem.xls LD_ExtraProblem_s.xls
Nov. 11, 2013 Regression using Matrix Algebra MatrixRegression.xls MatrixRegression.R
MatrixRegression_s.xls
Nov. 27, 2013 Index Selection BaseIndexExample.xlsx
IndexSelection.xls